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ArkDB - Genomes for the rest of us

Release Notes

ArkDB Web Application

Current Release: arkdb-webapp-2.0.20100106 (Wed, Jan 06, 2010)

Web Application to access data in the ArkDB database (a public repository for genome mapping data from farmed and other animal Species). Mapping Data can be explored textually through dynamically generated web pages, and maps can be drawn using either an embedded applet or ArkMAP, a desktop Java program downloadable using Web Start.

     
 

RELEASE HISTORY

 
 

arkdb-webapp-2.0.20100106 (Wed, Jan 06, 2010)

    New Features
   
  • Code all recompiled to use the new shared Roslin genetic model
  • New version 3.0.5SIGN of the map drawing applet compiled and signed, uses the shared Roslin genetic model and is dependant on Java1.5 JVM (should work on legacy pre-Intel MACs).
  • New version 2.0 of ArkMAP included - with improved drawing configuration features (rescaling, resizing and dragging maps etc.). Dependant on Java1.6 JVM (not available for legacy pre-Intel MACs).
    Bug Fixes
   
  • Fixed Bug RT 4491: generates sensible error message for Ensembl datasources with no chromosome maps
 
 

arkdb-webapp-1.0.20091130 (Mon, Nov 30, 2009)

    New Features
   
  • Renamed the ArkDB Map Drawing application: ArkMAP
  • Changed the startup parameters for ArkMAP to give it more memory, so that multiple large maps can be loaded.
  • Added help pages on using ArkMAP ( www.thearkdb.org/webstarthelp)
  • Updated the desktop icons downloaded with ArkMAP
  • Added Release History Page ( www.thearkdb.org/Release.action)
    Bug Fixes
   
  • Fixed Bug RT 4386: some markers were displaying the wrong species (when mapped on more than one species)
  • Fixed Bug RT 4422: ArkMAP : fixed bug when saving maps linked in from biomart which have ark markers superimposed
 
 

arkdb-webapp-1.0.20091005 (Mon, Oct 05, 2009)

    New Features
   
  • Added ability to search for Sequence (Assembly) Maps.
  • Webstart download for Map Drawing Application v1.4.
 
 

arkdb-webapp-1.0.20090902 (Wed, Sep 02, 2009)

    New Features
   
  • Reintroduced the ability to display Sequence (Assembly) Maps in ArkDB (previously hidden from users).
  • Added links to the ArkDB Web Services Application
  • Webstart download for Map Drawing Application v1.3.
 
 

arkdb-webapp-1.0.20090429 (Wed, Apr 29, 2009)

    New Features
   
  • First release to use stable release versions of all code dependencies
  • The embedded applet is now a permanently frozen Java1.5 version and digitally signed (1.0.20090305BJAVAsigned) The applet code is now frozen as Java1.5 compliant to allow use on older browsers and Macs.
  • Introduces webstart download for Map Drawing Application v1.0 (requires Java1.6).
  • Maps can now be drawn with either the embedded applet or by running the Map Drawing Application on the client machine. A user's preference is remembered throughout a session.
 
 

arkdb-webapp-1.0.20090115 (Thu, Jan 15, 2009)

 
 

arkdb-webapp-1.0.20081222 (Mon, Dec 22, 2008)

    New Features
   
  • Web App is now fully UTF8 enabled allowing display of and searching with extended character sets
  • Added the Roslin favicon to all pages on the Web App: will display in user's browser
 
 

arkdb-webapp-1.0.20081202 (Tue, Dec 02, 2008)

    Bug Fixes
   
  • Fixed bug RT3825: displaying duplicate maps erroneously
  • Fixed bug RT3859: bad hyperlinks created from missing publication records
 
 

arkdb-webapp-1.0.20081111 (Tue, Nov 11, 2008)

    New Features
   
  • First archived version of the ArkDB Web App
 
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